{ "_id": "6a2289efcd65a98ecbd540d2", "Package": "projections", "Title": "Project Future Case Incidence", "Version": "0.6.1", "Authors@R": "c(person(given = \"Thibaut\",\nfamily = \"Jombart\",\nrole = c(\"aut\", \"cre\"),\nemail = \"thibautjombart@gmail.com\"),\nperson(given = \"Pierre\",\nfamily = \"Nouvellet\",\nrole = \"aut\",\nemail = \"p.nouvellet@imperial.ac.uk\"),\nperson(given = \"Sangeeta\",\nfamily = \"Bhatia\",\nrole = \"ctb\",\nemail = \"sangeetabhatia03@gmail.com\"),\nperson(given = \"Zhian N.\",\nfamily = \"Kamvar\",\nrole = \"ctb\",\nemail = \"zkamvar@gmail.com\"),\nperson(given = \"Tim\",\nfamily = \"Taylor\",\nrole = \"ctb\",\nemail = \"tim.taylor@hiddenelephants.co.uk\"),\nperson(given = \"Stephane\",\nfamily = \"Ghozzi\",\nrole = \"ctb\",\nemail = \"stephane.ghozzi@mailbox.org\"))", "Description": "Provides functions and graphics for projecting daily\nincidence based on past incidence, and estimates of the serial\ninterval and reproduction number. Projections are based on a\nbranching process using a Poisson-distributed number of new\ncases per day, similar to the model used for estimating R in\n'EpiEstim' or in 'earlyR', and described by Nouvellet et al.\n(2017) . The package provides\nthe S3 class 'projections' which extends 'matrix', with\naccessors and additional helpers for handling, subsetting,\nmerging, or adding these objects, as well as dedicated printing\nand plotting methods.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "Roxygen": "list(markdown = TRUE)", "URL": "https://www.repidemicsconsortium.org/projections/", "BugReports": "https://github.com/reconhub/projections/issues", "Config/testthat/edition": "3", "Repository": "https://reconhub.r-universe.dev", "Date/Publication": "2024-12-06 15:41:19 UTC", "RemoteUrl": "https://github.com/reconhub/projections", "RemoteRef": "HEAD", "RemoteSha": "1aff0e912ddaf3ae34d8879a35327b99f4b8d4af", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-05 08:30:38 UTC", "User": "root" }, "Author": "Thibaut Jombart [aut, cre],\nPierre Nouvellet [aut],\nSangeeta Bhatia [ctb],\nZhian N. Kamvar [ctb],\nTim Taylor [ctb],\nStephane Ghozzi [ctb]", "Maintainer": "Thibaut Jombart ", "MD5sum": "18c55bf7fab1e7b0c693db8aa8b0db9a", "_user": "reconhub", "_type": "src", "_file": "projections_0.6.1.tar.gz", "_fileid": "860b26fd56042e3802bc8e016cbe1e6d01050bc5f80959cbd663d7896e3f8e45", "_filesize": 1009885, "_sha256": "860b26fd56042e3802bc8e016cbe1e6d01050bc5f80959cbd663d7896e3f8e45", "_created": "2026-06-05T08:30:38.000Z", "_published": "2026-06-05T08:33:51.762Z", "_distro": "noble", "_jobs": [ { "job": 79692387157, "time": 154, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7432275682" }, { "job": 79692387144, "time": 157, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7432276523" }, { "job": 79692387139, "time": 163, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7432270800" }, { "job": 79692387249, "time": 125, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7432260070" }, { "job": 79691894350, "time": 192, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7432226165" }, { "job": 79692387180, "time": 125, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7432266569" }, { "job": 79692387169, "time": 83, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7432253335" }, { "job": 79692387192, "time": 73, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7432250118" }, { "job": 79692387112, "time": 100, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7432259943" } ], "_buildurl": "https://github.com/r-universe/reconhub/actions/runs/27004250601", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/reconhub/projections", "_commit": { "id": "1aff0e912ddaf3ae34d8879a35327b99f4b8d4af", "author": "Thibaut Jombart ", "committer": "GitHub ", "message": "Merge pull request #42 from reconhub/issue_41\n\nhotfix for CRAN issues", "time": 1733499679 }, "_maintainer": { "name": "Thibaut Jombart", "email": "thibautjombart@gmail.com", "login": "thibautjombart", "description": "Senior Lecturer at Imperial College London. Consultant in outbreak analytics. R geek. Muay Thai enthusiast. Grindcore vocalist.", "uuid": 10757154 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "incidence", "version": ">= 1.4.1", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "outbreaks", "role": "Suggests" }, { "package": "magrittr", "role": "Suggests" }, { "package": "distcrete", "role": "Suggests" }, { "package": "svglite", "role": "Suggests" }, { "package": "EpiEstim", "role": "Suggests" } ], "_owner": "reconhub", "_selfowned": true, "_usedby": 1, "_updates": [], "_tags": [], "_stars": 14, "_contributors": [ { "user": "thibautjombart", "count": 216, "uuid": 10757154 }, { "user": "zkamvar", "count": 26, "uuid": 3639446 }, { "user": "timtaylor", "count": 18, "uuid": 43499035 }, { "user": "annecori", "count": 9, "uuid": 6973431 }, { "user": "stephaneghozzi", "count": 8, "uuid": 51886077 }, { "user": "sangeetabhatia03", "count": 4, "uuid": 15316049 }, { "user": "pnouvellet", "count": 2, "uuid": 13199244 } ], "_userbio": { "uuid": 20286215, "type": "organization", "name": "R Epidemics Consortium", "description": "Consortium for epidemics analysis and outbreak response using R" }, "_downloads": { "count": 364, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/projections" }, "_mentions": 4, "_devurl": "https://github.com/reconhub/projections", "_pkgdown": "https://www.repidemicsconsortium.org/projections/", "_searchresults": 186, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/projections.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/reconhub/projections", "_realowner": "reconhub", "_cranurl": true, "_releases": [ { "version": "0.0.1", "date": "2017-12-06" }, { "version": "0.1.1", "date": "2018-05-29" }, { "version": "0.3.0", "date": "2018-06-20" }, { "version": "0.3.1", "date": "2018-08-27" }, { "version": "0.5.1", "date": "2020-06-30" }, { "version": "0.5.2", "date": "2020-12-17" }, { "version": "0.5.4", "date": "2021-04-22" }, { "version": "0.6.0", "date": "2023-03-23" }, { "version": "0.6.1", "date": "2024-12-06" } ], "_exports": [ "add_projections", "build_projections", "get_dates", "merge_add_projections", "merge_projections", "project" ], "_help": [ { "page": "subset", "title": "Subsetting 'projections' objects", "topics": [ "\"subset.projections\"", "\"[.projections\"", "subset.projections", "[.projections" ] }, { "page": "conversions", "title": "Conversion of projections objects", "topics": [ "as.data.frame.projections", "as.matrix.projections" ] }, { "page": "build_projections", "title": "Constructor for projections objects", "topics": [ "build_projections" ] }, { "page": "cumulate.projections", "title": "Compute cumulative projections", "topics": [ "cumulate.projections" ] }, { "page": "projections_accessors", "title": "Access content projections objects", "topics": [ "get_dates", "get_dates.projections" ] }, { "page": "merge_add_projections", "title": "Add data of different projections objects", "topics": [ "+.projections", "merge_add_projections" ] }, { "page": "merge_projections", "title": "Merge a list of projections objects", "topics": [ "merge_projections" ] }, { "page": "plot.projections", "title": "Plot projections objects", "topics": [ "add_projections", "plot.projections" ] }, { "page": "print.projections", "title": "Print method for projections objects", "topics": [ "print.projections" ] }, { "page": "project", "title": "Project future incidence", "topics": [ "project" ] }, { "page": "summary.projections", "title": "Summary for projections objects", "topics": [ "summary.projections" ] } ], "_readme": "https://github.com/reconhub/projections/raw/HEAD/README.md", "_rundeps": [ "aweek", "cli", "cpp11", "farver", "ggplot2", "glue", "gtable", "incidence", "isoband", "labeling", "lifecycle", "R6", "RColorBrewer", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr" ], "_score": 6.971943480663442, "_indexed": true, "_nocasepkg": "projections", "_universes": [ "reconhub", "thibautjombart" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.6.1", "date": "2026-06-05T08:33:07.000Z", "distro": "noble", "commit": "1aff0e912ddaf3ae34d8879a35327b99f4b8d4af", "fileid": "d6fd6326fa76d47b44e4c9a8e9cce6a0be226f4bdf1cff86646151aba0d3797e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/reconhub/actions/runs/27004250601" }, { "r": "4.6.0", "os": "linux", "version": "0.6.1", "date": "2026-06-05T08:33:08.000Z", 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