Package: epicontacts 1.1.4

Finlay Campbell

epicontacts: Handling, Visualisation and Analysis of Epidemiological Contacts

A collection of tools for representing epidemiological contact data, composed of case line lists and contacts between cases. Also contains procedures for data handling, interactive graphics, and statistics.

Authors:Finlay Campbell [aut, cre], Thibaut Jombart [aut], Nistara Randhawa [aut], Bertrand Sudre [aut], VP Nagraj [aut], Thomas Crellen [aut], Zhian N. Kamvar [aut]

epicontacts_1.1.4.tar.gz
epicontacts_1.1.4.zip(r-4.7)epicontacts_1.1.4.zip(r-4.6)epicontacts_1.1.4.zip(r-4.5)
epicontacts_1.1.4.tgz(r-4.6-any)epicontacts_1.1.4.tgz(r-4.5-any)
epicontacts_1.1.4.tar.gz(r-4.7-any)epicontacts_1.1.4.tar.gz(r-4.6-any)
epicontacts_1.1.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
epicontacts/json (API)

# Install 'epicontacts' in R:
install.packages('epicontacts', repos = c('https://reconhub.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/reconhub/epicontacts/issues

Pkgdown/docs site:https://www.repidemicsconsortium.org

On CRAN:

Conda:

outbreak

8.40 score 18 stars 1 packages 174 scripts 740 downloads 3 mentions 16 exports 45 dependencies

Last updated from:1a09458ac4. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK144
source / vignettesOK232
linux-release-x86_64OK149
macos-release-arm64OK114
macos-oldrel-arm64OK114
windows-develOK105
windows-releaseOK89
windows-oldrelOK92
wasm-releaseOK146

Exports:cases_palcodeawesomeedges_palfac2colget_clustersget_degreeget_idget_pairwisegraph3Dmake_epicontactsspectralsubset_clusters_by_idsubset_clusters_by_sizethintranspvis_epicontacts

Dependencies:base64encbslibcachemclicpp11crosstalkdigestdplyrevaluatefastmapfontawesomefsgenericsgluehighrhtmltoolshtmlwidgetsigraphjquerylibjsonliteknitrlatticelazyevallifecyclemagrittrMatrixmemoisemimepillarpkgconfigR6rappdirsrlangrmarkdownsassthreejstibbletidyselecttinytexutf8vctrsvisNetworkwithrxfunyaml

epicontacts Class: Details Regarding the Data Structure for epicontacts Objects
make_epicontacts() | $linelist | $contacts | Generics | print.epicontacts() | summary.epicontacts() | subset.epicontacts() | plot.epicontacts()
Rendered fromepicontacts_class.Rmdusingknitr::rmarkdown

Last update: 2018-04-11
Started: 2016-12-22

epicontacts: Manipulation, Visualisation and Analysis of Epidemiological Contact Data
Introduction | Loading Data | Example Dataset | Creating epicontacts Object | Data Manipulation | Access Unique Identifiers | Subsetting | Visualisation | Default Plotting Method | 3D plots | Analysis | Extract Characteristics of Pairwise Nodes | Identify Clusters | Calculate Degree | References
Rendered fromepicontacts.Rmdusingknitr::rmarkdown

Last update: 2017-05-21
Started: 2016-06-28