Package: epitrix 0.4.0

Thibaut Jombart

epitrix:Small Helpers and Tricks for Epidemics Analysis

A collection of small functions useful for epidemics analysis and infectious disease modelling. This includes computation of basic reproduction numbers from growth rates, generation of hashed labels to anonymize data, and fitting discretized Gamma distributions.

Authors:Thibaut Jombart [aut, cre], Anne Cori [aut], Zhian N. Kamvar [ctb], Dirk Schumacher [ctb], Flavio Finger [aut], Charlie Whittaker [ctb]

epitrix_0.4.0.tar.gz
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epitrix.pdf |epitrix.html✨
epitrix/json (API)
NEWS

# Installepitrix in R:
install.packages('epitrix', repos = c('https://reconhub.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/reconhub/epitrix/issues

On CRAN:

epidemiology

14 exports 9 stars 2.52 score 23 dependencies 4 dependents 2 mentions 544 downloads

Last updated 1 years agofrom:94cb02aa83

Exports:AR2R0clean_labelsempirical_incubation_distfit_disc_gammafit_gamma_incubation_distgamma_log_likelihoodgamma_mucv2shapescalegamma_shapescale2mucvhash_nameslm2R0_sampleR02ARR02herd_immunity_thresholdr2R0sim_linelist

Dependencies:clicpp11distcretedplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigpurrrR6rlangsodiumstringistringrtibbletidyrtidyselectutf8vctrswithr

Example to estimate incubation period

Flavio Finger

Rendered fromestimate_incubation.Rmdusingknitr::rmarkdownon Jul 06 2024.

Last update: 2022-12-09
Started: 2019-02-12

Overview of the epitrix package

Thibaut Jombart

Rendered fromepitrix.Rmdusingknitr::rmarkdownon Jul 06 2024.

Last update: 2023-01-13
Started: 2017-05-17