Changes in version 0.4.0 (2023-01-13)                  

New Functions

  - AR2R0: calculate the R0 corresponding to a give attack rate
  - R02AR: calculate the attack rate corresponding to a give R0
  - R02herd_immunity_threshold: calculate the herd immunity threshold
    for a given R0
  - sim_linelist: simulates a simple linelist (with no epi model
    implied) data.frame

Bug fixes

  - removed the dependency on the linelist package by RECON
  - updated testing infrastructure to testthat 3rd edition
  - replaced appveyor and travis by github actions for continuous
    integration
  - fixed LaTeX conversion issues due to non-latin symbols in the
    example of clean_labels()

                        Changes in version 0.3.0                        

New Functions

  - emperical_incubation_dist() will estimate the empirical incubation
    distribution if given a data frame with dates of onset and a range
    of exposure dates (@ffinger, #13)
  - fit_gamma_incubation_dist() wraps empirical_incubation_dist() and
    fit_disc_gamma() to fit a discretized gamma distribution to the
    empirical incubation distribution results (@ffinger, #13).

New Features

  - clean_labels() gains the protect argument to protect meaningful
    symbols in the data.
  - hash_names() now has the hashfun option that allows users to specify
    either a "fast" or "secure" hashing function to use (@zkamvar, #21).

New Vignettes

  - "Estimating Incubation Period" shows the use of empirical incubation
    dist.

New Imports

  - functions from dplyr, purrr, rlang, and tidyr are now imported.

Bug Fix

  - clean_labels() can now handle non-latin characters and gains the
    trans_id argument, which allows the user to customise the
    transformations (see https://github.com/reconhub/epitrix/issues/19
    for details).

                 Changes in version 0.2.2 (2019-01-15)                  

  - Replace digest with sodium in Imports
  - Use sodium::scrypt() as a more cryptographically secure hashing
    algorithm for hash_names(). Thanks to @dirkschumacher for this
    addition. For details, see
    https://github.com/reconhub/epitrix/pull/7.
  - Fix LICENSE file to show who the copyright holder is.

                 Changes in version 0.2.1 (2018-08-28)                  

  - update documentation for compatibility with incidence 1.4.1

                 Changes in version 0.2.0 (2018-04-24)                  

  - added function clean_labels which can be used to standardise labels
    in variables, removing non-ascii characters, standardising
    separators, and more; now used in hash_names

                 Changes in version 0.1.2 (2018-03-01)                  

  - added salting algorithm to hash_names (issue 1)

  - fixed bug happening when using tibble inputs in hash_names (issue 2)

                 Changes in version 0.1.1 (2018-01-24)                  

  - fit_disc_gamma now also returns the fitted discretised gamma
    distribution as a distcrete object

                 Changes in version 0.1.0 (2017-11-26)                  

First release of the package! This includes the following features:

  - fit_disc_gamma: fit discretised gamma distribution

  - gamma_log_likelihood: compute gamma log likelihood

  - gamma_mucv2shapescale/gamma_shapescale2mucv: convert between
    different parametrisation of gamma distributions.

  - hash_names: generate hashed ('anonymised') labels from individual
    data.

  - r2R0: compute R0 from r

  - lm2R0_sample: genrate samples of R0 from a log-linear regression