Package: incidence
Type: Package
Title: Compute, Handle, Plot and Model Incidence of Dated Events
Version: 1.7.6
Authors@R: c(
  person("Thibaut", "Jombart", role = c("aut"), email = "thibautjombart@gmail.com"), 
  person("Zhian N.", "Kamvar", role = "aut", email = "zkamvar@gmail.com",
         comment = c(ORCID = "0000-0003-1458-7108")),
  person("Rich", "FitzJohn", role = "aut", email = "rich.fitzjohn@gmail.com"),
  person("Tim", "Taylor", role = "cre", email = "tim.taylor@hiddenelephants.co.uk",
         comment = c(ORCID = "0000-0002-8587-7113")),
  person("Jun", "Cai", role = "ctb", email = "cai-j12@mails.tsinghua.edu.cn", 
         comment = c(ORCID = "0000-0001-9495-1226")), 
  person("Sangeeta", "Bhatia", role = "ctb", email = "sangeetabhatia03@gmail.com"),
  person("Jakob", "Schumacher", role = "ctb"),
  person("Juliet R.C.", "Pulliam", role = "ctb", email = "pulliam@sun.ac.za",
         comment = c(ORCID = "0000-0003-3314-8223"))
  )
Description: Provides functions and classes to compute, handle and
        visualise incidence from dated events for a defined time
        interval. Dates can be provided in various standard formats.
        The class 'incidence' is used to store computed incidence and
        can be easily manipulated, subsetted, and plotted. In addition,
        log-linear models can be fitted to 'incidence' objects using
        'fit'. This package is part of the RECON
        (<https://www.repidemicsconsortium.org/>) toolkit for outbreak
        analysis.
Encoding: UTF-8
License: MIT + file LICENSE
URL: https://www.repidemicsconsortium.org/incidence/
BugReports: https://github.com/reconhub/incidence/issues
RoxygenNote: 7.3.2
Imports: ggplot2 (>= 3.3.2), aweek (>= 0.2.0)
Suggests: magrittr, outbreaks, testthat, vdiffr, knitr, rmarkdown,
        scales, cowplot
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
Repository: https://reconhub.r-universe.dev
Date/Publication: 2025-06-19 21:25:56 UTC
RemoteUrl: https://github.com/reconhub/incidence
RemoteRef: HEAD
RemoteSha: bda31a524af302650727b396605729ea02513353
NeedsCompilation: no
Packaged: 2026-06-16 09:18:22 UTC; root
Author: Thibaut Jombart [aut],
  Zhian N. Kamvar [aut] (ORCID: <https://orcid.org/0000-0003-1458-7108>),
  Rich FitzJohn [aut],
  Tim Taylor [cre] (ORCID: <https://orcid.org/0000-0002-8587-7113>),
  Jun Cai [ctb] (ORCID: <https://orcid.org/0000-0001-9495-1226>),
  Sangeeta Bhatia [ctb],
  Jakob Schumacher [ctb],
  Juliet R.C. Pulliam [ctb] (ORCID:
    <https://orcid.org/0000-0003-3314-8223>)
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>