Package: epiflows 0.2.1

Pawel Piatkowski

epiflows: Predicting Disease Spread from Flow Data

Provides functions and classes designed to handle and visualise epidemiological flows between locations. Also contains a statistical method for predicting disease spread from flow data initially described in Dorigatti et al. (2017) <doi:10.2807/1560-7917.ES.2017.22.28.30572>. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.

Authors:Pawel Piatkowski [aut, cre], Paula Moraga [aut], Isobel Blake [ctb, dtc], Thibaut Jombart [aut], VP Nagraj [aut], Zhian N. Kamvar [aut], Salla E. Toikkanen [aut]

epiflows_0.2.1.tar.gz
epiflows_0.2.1.zip(r-4.5)epiflows_0.2.1.zip(r-4.4)epiflows_0.2.1.zip(r-4.3)
epiflows_0.2.1.tgz(r-4.4-any)epiflows_0.2.1.tgz(r-4.3-any)
epiflows_0.2.1.tar.gz(r-4.5-noble)epiflows_0.2.1.tar.gz(r-4.4-noble)
epiflows_0.2.1.tgz(r-4.4-emscripten)epiflows_0.2.1.tgz(r-4.3-emscripten)
epiflows.pdf |epiflows.html✨
epiflows/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/reconhub/epiflows/issues

On CRAN:

outbreak

17 exports 18 stars 2.28 score 81 dependencies 1 mentions 20 scripts 351 downloads

Last updated 12 months agofrom:2fdb4d22d8. Checks:OK: 5 NOTE: 2. Indexed: yes.

Exports:add_coordinatesas.SpatialLinesDataFrameestimate_risk_spreadget_coordinatesget_flowsget_idget_locationsget_nget_pop_sizeget_varsglobal_varsgrid_epiflowsmake_epiflowsmap_epiflowsset_varsset_vars<-vis_epiflows

Dependencies:askpassbase64encbitopsbslibcachemclicolorspacecpp11crosstalkcurldigestdplyrepicontactsevaluatefansifarverfastmapfontawesomefsgenericsgeosphereggmapggplot2gluegtablehighrhtmltoolshtmlwidgetshttrigraphisobandjpegjquerylibjsonliteknitrlabelinglatticelazyevalleafletleaflet.providerslifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplyrpngpurrrR6rappdirsrasterRColorBrewerRcpprlangrmarkdownsassscalesspstringistringrsysterrathreejstibbletidyrtidyselecttinytexutf8vctrsviridisLitevisNetworkwithrxfunyaml