Package: projections 0.6.1

Thibaut Jombart

projections: Project Future Case Incidence

Provides functions and graphics for projecting daily incidence based on past incidence, and estimates of the serial interval and reproduction number. Projections are based on a branching process using a Poisson-distributed number of new cases per day, similar to the model used for estimating R in 'EpiEstim' or in 'earlyR', and described by Nouvellet et al. (2017) <doi:10.1016/j.epidem.2017.02.012>. The package provides the S3 class 'projections' which extends 'matrix', with accessors and additional helpers for handling, subsetting, merging, or adding these objects, as well as dedicated printing and plotting methods.

Authors:Thibaut Jombart [aut, cre], Pierre Nouvellet [aut], Sangeeta Bhatia [ctb], Zhian N. Kamvar [ctb], Tim Taylor [ctb], Stephane Ghozzi [ctb]

projections_0.6.1.tar.gz
projections_0.6.1.zip(r-4.7)projections_0.6.1.zip(r-4.6)projections_0.6.1.zip(r-4.5)
projections_0.6.1.tgz(r-4.6-any)projections_0.6.1.tgz(r-4.5-any)
projections_0.6.1.tar.gz(r-4.7-any)projections_0.6.1.tar.gz(r-4.6-any)
projections_0.6.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
projections/json (API)
NEWS

# Install 'projections' in R:
install.packages('projections', repos = c('https://reconhub.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/reconhub/projections/issues

Pkgdown/docs site:https://www.repidemicsconsortium.org

On CRAN:

Conda:

6.97 score 14 stars 1 packages 186 scripts 449 downloads 4 mentions 6 exports 19 dependencies

Last updated from:1aff0e912d. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK134
source / vignettesOK180
linux-release-x86_64OK171
macos-release-arm64OK213
macos-oldrel-arm64OK179
windows-develOK119
windows-releaseOK131
windows-oldrelOK85
wasm-releaseOK118

Exports:add_projectionsbuild_projectionsget_datesmerge_add_projectionsmerge_projectionsproject

Dependencies:aweekclicpp11farverggplot2gluegtableincidenceisobandlabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Subsetting 'projections' objects"subset.projections" "[.projections" subset.projections [.projections
Conversion of projections objectsas.data.frame.projections as.matrix.projections
Constructor for projections objectsbuild_projections
Compute cumulative projectionscumulate.projections
Access content projections objectsget_dates get_dates.projections
Add data of different projections objects+.projections merge_add_projections
Merge a list of projections objectsmerge_projections
Plot projections objectsadd_projections plot.projections
Print method for projections objectsprint.projections
Project future incidenceproject
Summary for projections objectssummary.projections