Package: projections 0.6.0

Thibaut Jombart

projections:Project Future Case Incidence

Provides functions and graphics for projecting daily incidence based on past incidence, and estimates of the serial interval and reproduction number. Projections are based on a branching process using a Poisson-distributed number of new cases per day, similar to the model used for estimating R in 'EpiEstim' or in 'earlyR', and described by Nouvellet et al. (2017) <doi:10.1016/j.epidem.2017.02.012>. The package provides the S3 class 'projections' which extends 'matrix', with accessors and additional helpers for handling, subsetting, merging, or adding these objects, as well as dedicated printing and plotting methods.

Authors:Thibaut Jombart [aut, cre], Pierre Nouvellet [aut], Sangeeta Bhatia [ctb], Zhian N. Kamvar [ctb], Tim Taylor [ctb], Stephane Ghozzi [ctb]

projections_0.6.0.tar.gz
projections_0.6.0.zip(r-4.5)projections_0.6.0.zip(r-4.4)projections_0.6.0.zip(r-4.3)
projections_0.6.0.tgz(r-4.4-any)projections_0.6.0.tgz(r-4.3-any)
projections_0.6.0.tar.gz(r-4.5-noble)projections_0.6.0.tar.gz(r-4.4-noble)
projections_0.6.0.tgz(r-4.4-emscripten)projections_0.6.0.tgz(r-4.3-emscripten)
projections.pdf |projections.html✨
projections/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/reconhub/projections/issues

On CRAN:

6 exports 14 stars 2.02 score 30 dependencies 4 mentions 416 downloads

Last updated 1 years agofrom:1fe5715562

Exports:add_projectionsbuild_projectionsget_datesmerge_add_projectionsmerge_projectionsproject

Dependencies:aweekclicolorspacefansifarverggplot2gluegtableincidenceisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr